PTC: An Interactive Tool for Phylogenetic Tree Construction
نویسندگان
چکیده
A phylogenetic tree represents the evolutionary history of a group of organisms. In this work, we introduce a novel interactive tool for constructing phylogenetic trees, Phylogenetic Tree Construction package. The package supports four well-known algorithms, Unweighted Pair Group Method using Arithmetic average, Neighbor Joining, Fitch Margoliash, and Maximum Parsimony.
منابع مشابه
Interactive Tree Of Life (iTOL): an online tool for phylogenetic tree display and annotation
UNLABELLED Interactive Tree Of Life (iTOL) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. Trees can be interactively pruned and re-rooted. Various types of data such as genome sizes or protein domain repertoires can be mapped onto the tree. Export to several bitmap and vector graphics formats is supported. AVAILABILITY iTOL is available at http://itol....
متن کاملInteractive tree of life (iTOL) v3: an online tool for the display and annotation of phylogenetic and other trees
Interactive Tree Of Life (http://itol.embl.de) is a web-based tool for the display, manipulation and annotation of phylogenetic trees. It is freely available and open to everyone. The current version was completely redesigned and rewritten, utilizing current web technologies for speedy and streamlined processing. Numerous new features were introduced and several new data types are now supported...
متن کاملTowards Simple, Easy to Understand, an Interactive Decision Tree Algorithm
Data mining is intended to extract hidden useful knowledge from large datasets in a given application. This usefulness relates to the user goal, in other words only the user can determine whether the resulting knowledge answers his goal. Therefore, data mining tool should be highly interactive and participatory. This paper presents an interactive decision tree algorithm using visualization meth...
متن کاملUltrametric Tree Construction and Evaluation Platform (UTCE) in Grid Computing System
-UTCE is a platform for ultrametric tree construction and tree evaluation. Phylogenetic tree can be used by biologists to observe the relationship between species, and the ultrametric tree is a popular model which is assumed that the rate of evolution is constant. UPGMA is one of well-know ultrametric tree constructing algorithm. However, UPGMA is a heuristic algorithm and can not guarantee the...
متن کاملPhylogenetic analysis of HSP70 gene of Aspergillus fumigatus reveals conservation intra-species and divergence inter-species
Aspergillus fumigatus is a saprophyte fungus, widely spread in a variety of ecologicalniches and the most prevalent aspergilli responsible for human and animal invasiveaspergillosis. The first step to develop novel and efficient therapies is the identificationand understanding of the key tolerance and virulence factors of pathogens. The mainfocus of the present study is to perform the similarit...
متن کامل